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C.B. Azodi, L. Zappia, A. Oshlack, & D.J. McCarthy. splatPop: Simulating population scale single-cell RNA sequencing data. Genome Biology. Find Here. The software is available through bioconductor.

Moore, B.M., Y.S. Lee, P. Wang, C.B. Azodi, E. Grotewold, & S.H. Shiu. Modeling temporal and hormonal regulation of plant transcriptional response to wounding. The Plant Cell. Find Here.

Cuomo, ASEco, Alvari Gco, Azodi CBco, single-cell eQTLGen consortium, McCarthy DJ, Bonder MJ. Optimising expression quantitative trait locus mapping workflows for single-cell studies. Genome Biology. Find Here.

Wu, T., H. Goh, C.B. Azodi, M. Liu, & D. Urano. Evolutionarily conserved hierarchical gene regulatory networks for plant salt stress response. Nature Plants. Find Here.


Azodi CB, LLoyd JP, Shiu SH. The cis-regulatory codes of response to combined heat and drought stress in Arabidopsis thaliana. NAR Genomics and Bioinformatics. Find Here.

Azodi CB, Tang J, Shiu SH. Opening the Black Box: Interpretable Machine Learning for Geneticists. Trends in Genetics. Find Here. Media Coverage.

Schwarz B, Azodi CB, Shiu SH, Bauer P. Putative cis-regulatory elements predict iron deficiency responses in Arabidopsis roots. Plant Physiology. Find Here. Media Coverage.


Azodi CB, Pardo J, VanBuren R, de los Campos G, Shiu SH. Transcriptome-based prediction of complex traits in maize. The Plant Cell. Find Here. Media Coverage.

Azodi CB, Dietz T. (2019) Perceptions of emerging biotechnologies. Environmental Research Letters. Find Here.

Azodi CB, McCarren A, Roantree M, de los Campos G, Shiu SH. (2019) Benchmarking algorithms for genomic prediction of complex traits. G3. Find Here.

Uygun Sco, Azodi CBco, Shiu SH. (2019) Cis-regulatory code for predicting plant cell-type specific high salinity response. Plant Physiology. Find Here.

Lloyd JP, Bowman MJ, Azodi CB, Moghe GD, Childs KL, Shiu SH. (2019) Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae. Scientific Reports. Find Here.

Panchy NL, Azodi CB, Winship EF, Shiu SH (2019) Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication. BMC Genomics. 19:77 Find Here.


Uygun Sco, Seddon AEco, Azodi CB, Shiu SH (2017) Predictive models of spatial transcriptional response to high salinity. Plant Physiol. 174:450-464 Find Here.

Dowdell AS, Murphy MD, Azodi CB, Swanson SK, Florens L, Chen S. Zückert WR. (2017) Comprehensive spatial analysis of the Borrelia burgdorferi lipoproteome reveals a compartmentalization bias toward the bacterial surface. J of Bacteriology. 174:450-464 Find Here.


D’Aloia CC, Azodi CB, Sheldon SP, Trombulak SC, Ardren WR. (2015) Genetic models reveal historical patterns of sea lamprey population fluctuations within Lake Champlain. PeerJ. Find Here.

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co designates co-first author